[ccp4bb] coot with probe and reduce

2012-02-25 Thread Rajesh kumar
Dear All, I am trying to use probe and reduce with coot new version. I tried as suggested in coot FAQ page- 1. renamed probe.exe and reduce.exe were put in C:\WinCoot\bin- didnt show validate/probe clashes as active n coot 2. made changes to group settings.py in wincoot/share/coot/python folder

[ccp4bb] Membrane Protein Crystallization Plates

2012-02-25 Thread Yuri Pompeu
Hello Everyone, I am considering the purchase of crystallization plates for membrane proteins. I would love to hear what some of the community thinks or has experienced with these. Particulalrly the monoolein and monoolein/cholesterol coated plates ( I am not sure I can mention the vendor here bu

[ccp4bb] Any calculation function in CCP4 to analyze coordinate file?

2012-02-25 Thread WENHE ZHONG
Dear members, Just have a silly question past my mind: is there any program in CCP4 can be used to analyze coordinate file (.pdb format) to have a very general/overall discription about the structure? --such as the total number of protein residues/water/ligand, the total atoms of protein/water/lig

[ccp4bb] Heterotetrameric protein

2012-02-25 Thread Koustav Maity
Hi all, does anyone know a protein which make hetero tetramer of A2B2 which arrange as[image: Inline image 1] and NOT as [image: Inline image 2]? Its great if these proteins are small? All the hetero tetramer I found was of [image: Inline image 3] type. Thanks Dhiraj <><>

Re: [ccp4bb] Heterotetrameric protein

2012-02-25 Thread Tanner, John J.
Tryptophan synthase forms a ABBA tetramer (PDB 2J9X). It is not exactly what you want, but it is different from what you have found. Jack Tanner John J. Tanner Professor of Chemistry and Biochemistry University of Missouri-Columbia 125 Chemistry Building Columbia, MO 65211 email: tanne...@mis

Re: [ccp4bb] Heterotetrameric protein

2012-02-25 Thread Lavy, Tali
Hi Dhiraj, We've just submitted such a heterotetramer to the pdb (3V2U) Tali From: CCP4 bulletin board [CCP4BB@JISCMAIL.AC.UK] on behalf of Koustav Maity [mai...@gmail.com] Sent: Saturday, February 25, 2012 7:26 PM To: CCP4BB@JISCMAIL.AC.UK Subject: [ccp4bb] Hete

Re: [ccp4bb] Membrane Protein Crystallization Plates

2012-02-25 Thread Pius Padayatti
Hi Yuri, i strongly suggest these plates sold through Hampton research Paul Marienfeld GmbH plates for your use. here is a link , best plates in the market. link: http://hamptonresearch.com/product_detail.aspx?cid=10&sid=182&pid=611 Plates comes with extra cover slips in addition to single glass c