Filip Van Petegem wrote:
While trying to perform some docking experiments with crystal structures
into cryoEM maps, I found that some deposited EM maps are not at the
right size relative to crystal structure coordinates. The problem is
independent of the graphics program used (e.g. VMD, chime
Filip Van Petegem writes:
> While trying to perform some docking experiments with crystal structures into
> cryoEM maps, I found that some deposited EM maps are not at the right size
> relative to crystal structure coordinates (e.g. a ccp4 formatted deposited EM
> map looks smaller than a crystal
Jiamu,
That is a question for pymol-users, not ccp4bb:
http://sourceforge.net/mail/?group_id=4546
Cheers,
Warren
PS. here's one answer:
# create the objects
load $TUT/1hpv.pdb
create side1, chain A
create side2, chain B
dele 1hpv
# splay apart the interface
show surface, side1 within 5
Hi all,
I am trying to refine a structure to about 2.0A. Indexing in HKL2000 indicates
the protein crystallized in P2 with unit cell lengths (a1=67.5, b1=58.8,
c1=98.9) and angles (alpha1=90, beta1=101.5, gamma1=90). Molecular replacement
with Phaser yields a solution in P1 21 1 with four mol
Hi Jack,
just a famous example:
The LIM region of a presumptive Caenorhabditis elegans transcription
factor is an iron-sulfur- and zinc-containing metallodomain.
Li PM, Reichert J, Freyd G, Horvitz HR, Walsh CT.
Proc Natl Acad Sci U S A. 1991 Oct 15;88(20):9210-3.
and
Cysteine-rich LIM domai
