LSQKAB gives something of what you want..
If you fit domain_open to domain_closed after the rest of the structure
is aligned.
you get
the COM of the two domains.
the rotation angles in euler and polar form
I would say the rotation angle was the omega angle and the translation
the difference b
The PISA service at the EBI does exactly this
msdpisa
Either download a pdb or use the CCP4 GUI to run a cut down version of
it in house
Eleanor
Kay Diederichs wrote:
Hi,
check out
http://strucbio.biologie.uni-konstanz.de/ccp4wiki/index.php/Servers_and_programs_for_sequence_analysis
HT
Vlad Smith schrieb:
Hi all,
I have run into an unusual problem and am looking for some help. I am
working with a small protein that is 76 amino acids in length. I have
collected anomalous data and have located the 4/5 selenomethionine sites
that's a lot
using SHELX C/D and SHARP. The map
Well - some things to consider.
1) Rfree will often go up a bit but this seems too much.
2) Does the mz file have the right spacegroup in the header?
It is possible to have processed data in one spacegroup and have the Se
solution in the enantiomorph..
You might have to actually CHANGE the spa
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Dear Friends,
I recently have a partially complete(90%) model that
refined to R = 26%
and R(free) = 30% at 2.5 A data and looks fine in the 2fo-fc map. This is a
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Hi, All
I encountered an error using "Edit Job Data" on CCP4i (CCP4 6.1.1 with
update patch-04_03_09 / Linux prebuilt).
I modified title of Job Info with "Edit Job Data". In the current
session, re-opening "Edit Job Data" dialog had no problem. But after
restarting CCP4i program, the command said
Hello Raja,
Are you sure your smaller protein is in your crystal? Have you
run a gel or performed mass spec on dissolved crystals?
ho
UC Berkeley
In database.def has syntax error.
INPUT_FILES_DIR,2 "M2 {Full path.."
However I corrected "{Full path.." to "{Full path..}", the problem did
not be solved.
> In my case, it was caused with modifying simple MOLREP job. I checked
> database.def file in project directory.
>
> I think this l
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