Hi Vaheh,
Below is a reply I made to the BB in 2007 after a similar enquiry. I expect the
program should still
work the same, although I haven't used it in recent releases. You have to run
it from line command,
as there is no interface for it in CCP4i. If you are running under Windows, as
I do,
Dear all,
Please could you bring this advert to the attention of any potential
candidates?
An International PhD Program was recently created by the Doctoral
School "CBS2-Sciences Chimiques et Biologiques pour la Santé" to attract
students who wish to undertake a thesis financed by the French g
Hi Joe,
Do you have insertions (e.g. residues 62A, 62B, 62C) or deletions (e.g.
residues 42 and 45) which are connected? These may cause broken
connectivities in pymol. In this case, I would renumber the pdb file and
see how it then displays.
Best regards,
Herman
-Original Message-
From
Hi Joe,
check chainID and segID; there might be a break in one of them not noticed
by phenix because it uses the other one, but then leading to an apparent
backbone break in coot because it uses the other one ...
Best
Clemens
-Original Message-
From: CCP4 bulletin board [mailto:ccp...
All-
We currently have one open position for an x-ray crystallographer at
Merck
Research Labs in Pennsylvania. The official job posting is pasted
below, and
if you are interested in applying, please apply formally through the
Merck
Website (www.merck.com/careers) with Job ID BIO001940.
Best Wis
Hi Jan
If they exist, could you please send me any of the .log files in the
following directory:
~/.CCP4/
In particular the file dbhandler.log. These should help to fix the
problem.
Thanks
Norman Stein
CCP4
-Original Message-
From: CCP4 bulletin board [mailto:ccp...@jiscmail.ac.uk]
Hello,
We are upgrading our x-ray crystallography system. The old equipment
includes Rigaku RUH3R generator and RAXIS-IIc detector is available for
FREE. You are responsible for shipping. If you are interested, please
contact Ming Wang at wa...@cshl.edu. Below is list of component of the
equipme
Hi,
I have a .phs file with map coefficients that I would like to open in
pymol. So, I would like to convert the file to either a ccp4 or cns map
file, or a file format that pymol will recognize. I do not have an .mtz
file with the same map coefficients included. Can anyone help me?
Thanks,
J
Hi,
Not the quickest way, but you can easily convert PHS files to MTZ files
using CCP4i ("Convert to/modify/extend MTZ" - via the f2mtz programme). Then
generate the map as you would a normal MTZ file.
Since PHS files come in 2 flavours, check the following web site to see
which format your's is
SFTOOLS should read the phs file and allow you to write it out in a
number of different formats, including MTZ.
From the command line type:
sftools
read yourfile.phs
write yourfile.mtz
quit
The program will ask a bunch of questions to get space group, unit cell etc.
Bart
John Bruning wrote:
From: Mark A. White
To: John Bruning
Cc: CCP4BB@JISCMAIL.AC.UK
Subject: Re: [ccp4bb] .phs file conversion
Date: Wed, 4 Mar 2009 14:16:47 -0600
John,
The PHS file has the coefficients to make a map, along with the cell
parameters, but is not itself a map. There are a few choices.
1) View the
hi, i didnt notice anyone mention phs2mtz
can be found here at least:
http://schneider.group.ifom-ieo-campus.it/hkl2map/index.html
-tommi
On 4.3.2009, at 23.24, Bart Hazes wrote:
SFTOOLS should read the phs file and allow you to write it out in a
number of different formats, including MTZ.
CALL FOR PROPOSALS for beam time at MAX-lab, Lund, Sweden.
Researchers using synchrotron radiation are invited to submit proposals
for beam time for experiments to be carried out during the time period
July 2009 to June 2010.
The available facilities include beamlines for MX and SAXS, see bel
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