[ccp4bb] MacCHESS on F2 station available

2008-03-11 Thread Richard Gillilan
We still have openings available for the MAD station F2 during the month of April. There have been a number of recent improvements to F2, so if you haven't used the station in a while, you might want to check it out. Microbeam optics are available for this line on request. Interested users

[ccp4bb] 3D co-ordinate conversion

2008-03-11 Thread Raja Dey
Hi, Does anyone have ready made script to convert 3D co-ordinate from x,y,z to y,x,-z+2/3. I need to create a new pdb file from existing one. I am using ubuntu linux with tcshell ans also mac with bash shell. Thank you in advance for the script. RD -

[ccp4bb] Well-paid PhD position in Protein Crystallography and Cell Biology

2008-03-11 Thread Ute Krengel
I would like to announce a PhD position in Protein crystallography and Cell Biology, on a project entitled "Structure/function studies of fungal lectins and bacterial toxins". The project is part of an emerging top-tier research environment, promoted by the University of Oslo. The main goal of this

Re: [ccp4bb] 3D co-ordinate conversion

2008-03-11 Thread Tim Gruene
Hi, does it have to be a script? pdbset from ccp4 and moleman(2) by G. Kleywegt should be able to carry out this transformation. I think, the rotation matrix would be 0 1 0 1 0 0 0 0 -1 and the translational vector (0 0 2/3). So in pdbset, the command would probably be transform fractional

[ccp4bb] [Job] Scientific Software Developer - PDB/UCSD La Jolla, CA

2008-03-11 Thread Peter Rose
The RCSB Protein Data Bank at the University of California San Diego has an open position for a junior Scientific Software Developer: http://joblink.ucsd.edu/bulletin/job.html?cat=new&job_id=45537 Please contact Dr. Peter Rose at [EMAIL PROTECTED] or Dr. Phil Bourne at [EMAIL PROTECTED] about thi

[ccp4bb] Collaborative Crystallography

2008-03-11 Thread Banumathi Sankaran
The Berkeley Center for Structural Biology (BCSB) is pleased to announce a new Collaborative Crystallography Pilot Program (CC) at the Advanced Light Source in Berkeley. Through this program, scientists are able to send protein crystals to BCSB staff researchers for data collection and analysis.

[ccp4bb] changing names of many files

2008-03-11 Thread Raja Dey
Hi, How I can change names of many files keeping the extension same. My files are like this 1105 A0176.osc 1105 A0177.osc 1105 A0178.osc 1105 A0179.osc 1105 A0180.osc I want to change them as A0176.osc A0177.osc A0178.osc A0179.osc A0180.osc I am using ubuntu linux. Thanks... RD Raja Dey,

Re: [ccp4bb] changing names of many files

2008-03-11 Thread William Scott
Install zsh. Then invoke it. Then issue: autoload -U zmv alias mmv='noglob zmv -W' Then you are ready for some fun: mmv 1105\ A*.osc A*.osc Then if you decide to make your default shell zsh, you can put that in your .zshrc file and all you have to remember in the future is mmv Raja Dey

Re: [ccp4bb] changing names of many files

2008-03-11 Thread James Stroud
I don't know where this comes from, but its called rename-alot. Its a perl script. I'm guessing "Larry" is Larry Wall, but who knows. chmod a +x it and then put it in your path (~/bin) You run it like this rename-alot 's/1105 A/A/' *.osc The above will change all files that look like this: "