Re: [ccp4bb] Diamond and ESRF future.

2008-03-06 Thread John R Helliwell
Dear Peter, Many thanks. I will forward to you my input to STFC thus far. Best wishes and regards, John On 3/4/08, Moody, Dr P.C.E. <[EMAIL PROTECTED]> wrote: > > As you may know there is a significant shortfall in the STFC budget, they > are the body that runs Diamond and the UK contribution t

[ccp4bb] polarrfn, pltdev

2008-03-06 Thread Thomas Edwards
Dear CCP4BB, I'm trying to genereate some self rotations with polarrfn to decide on the NCS and number of molecules in my AU. using polarrfn script (copied from the examples on the web): # # Self-rotation function # set resolution = 15 3.5 set radius = 20 # Calculate whole map, & search for

[ccp4bb] EMBO Workshop Announcement

2008-03-06 Thread Kim Henrick
Announcement off an EMBO Workshop "Computational Aspects of the Protein Target Selection, Protein Production Management and Structure Analysis Pipeline" 22nd - 26th September 2008 To be held at EMBL Hinxton United Kingdom see http://www.ebi.ac.uk/msd-srv/docs/embo08/ for preliminary timetab

Re: [ccp4bb] polarrfn, pltdev

2008-03-06 Thread Ian Tickle
Hi Thomas I normally run pltdev on the whole map, did you try that? There may be a problem just plotting one section because I think it may rescale the SRF values to the origin value on the first section, so if that happens to be zero on the kappa=180 section you'll get division by zero. The ori

[ccp4bb] FW: polarrfn, pltdev - problem solved

2008-03-06 Thread Thomas Edwards
Thanks to Ian and Marcus. However, it turned out not to be a pltdev problem at all... It looked like polarrfn was generating maps OK, but I guess not. When I ran the same thing on a Mac OSX everything worked. Great. I have some peaks. Now I need to think. Hmmm. Not sure what the problem was - oth

[ccp4bb] STFC Consultation exercise on programmatic review

2008-03-06 Thread Moody, Dr P.C.E.
Following my earlier email, please note that further information has just been added to the site (http://www.scitech.ac.uk/stfcconsultation/comment.aspx). This includes a brief explanation about what was considered under each heading on the PALS prioritisation list. Peter Peter Moody 1/56 Henr

[ccp4bb] 5-methy 2-deoxy Cytidine modified DNA duplex

2008-03-06 Thread E rajakumar
Dear CCP4 users Sorry for non CCP4 topic. I want to know a company which can synthesize 5-methyl 2-deoxy Cytidine modified DNA duplex. Thank you in advance Rajakumara E. Rajakumara Postdoctoral Fellow Strcutural Biology Program Memorial Sloan-Kettering Cancer Center New York-10021 NY 0

[ccp4bb] Postdoc position at NREL

2008-03-06 Thread Lunin, Vladimir
The National Renewable Energy Laboratory (NREL), located at the foothills of the Rocky Mountains in Golden, Colorado, is the nation's primary laboratory for research, development, and deployment of renewable energy and energy efficiency technologies. NREL's Chemical and Biosciences Center has an im

[ccp4bb] Molecular replacement of a multidomain protein

2008-03-06 Thread Anjali Mehta
Dear All, I am working with a Bifunctional protein of molecular weight ~60 kDa. I have a 3.3 angstrom native dataset. The matthews number show there are 6 molecules in the asymmetric unit. The structures of the individual domains are already known from prokaryotes. The sequence identity with the k