Re: [ccp4bb] Ugly fonts in CCP4i/Mosflm on Mandriva Linux 2008

2007-11-08 Thread Tim Gruene
The error message ** Unable to load *adobe-courier-medium-r*--8* font ** points out that the problem is not tcl- but X-related. I suppose that your fonts in X are provided by the fontconfig library. Either it is miss-configured or you are missing the correct package containing the adobe-fonts

Re: [ccp4bb] Ugly fonts in CCP4i/Mosflm on Mandriva Linux 2008

2007-11-08 Thread P J Briggs
Dear Rob It is possible to alter the fonts used by CCP4i by going into the "System Administration" -> "Configure Interface" window in CCP4i, and scrolling down to the bottom where there is a folder called "Fonts". This shows you the font sets current defined in the interface, which is where

Re: [ccp4bb] Ugly fonts in CCP4i/Mosflm on Mandriva Linux 2008

2007-11-08 Thread Ethan A Merritt
On Wednesday 07 November 2007 23:16, CCP4ibb for Neutze Gp. wrote: > Dear colleagues, > > On upgrading our machines to Mandriva Linux 2008 I see > extremely ugly fonts in CCP4i and Mosflm. Yeah. We ran into this also. But it is easy to fix. You need to install the full set of x11 fonts: urpmi

Re: [ccp4bb] Ugly fonts in CCP4i/Mosflm on Mandriva Linux 2008

2007-11-08 Thread Jim Pflugrath
Peter wrote: You can edit these to reflect something that is available on the system - I suspect that replacing the word "Adobe" with an asterisk might work, however I haven't tried this myself (and I don't know how to easily query the fonts that are available on the system - perhaps some X11

Re: [ccp4bb] The importance of USING our validation tools

2007-11-08 Thread Jacob Keller
Does anyone here know what, if anything, happened with the whole Ajees et al. debacle? Just swept under the carpet, lost in the mists of time? Jacob Keller *** Jacob Pearson Keller Northwestern University Medical Scientist Training Program Dallos Laborato

Re: [ccp4bb] interactive program to mutate RNA models

2007-11-08 Thread Green, Todd
Coot did the trick. Thanks William. -Original Message- From: CCP4 bulletin board on behalf of William Scott Sent: Thu 11/8/2007 4:46 PM To: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] interactive program to mutate RNA models Coot mutates RNA the same way it does DNA and proteins. (Make

Re: [ccp4bb] interactive program to mutate RNA models

2007-11-08 Thread William Scott
Coot mutates RNA the same way it does DNA and proteins. (Make sure you have the one-letter code, not the CNS convention). O also does this. Green, Todd wrote: > Hello all, > I have models of poly-U RNA that I would like to mutate to other bases. Is > there a program that I can use to mutate the

[ccp4bb] interactive program to mutate RNA models

2007-11-08 Thread Green, Todd
Hello all, I have models of poly-U RNA that I would like to mutate to other bases. Is there a program that I can use to mutate the base say similar to the way COOT mutates the side-chains of amino acids? It would be a plus if I could mutate the base only, ie. fixing the ribose-phosphate backbone

[ccp4bb] pointless (1.2.0) and enantiomorphic SG's

2007-11-08 Thread Bryan W. Lepore
when pointless (1.2.0) finds enantiomorphic SG's, what is the criterion for 'Selecting' one over the other? e.g. i ran pointless on some tetragonal data, and the enantiomorphs SG92/SG96 are selected as strong candidates Spacegroup TotProb SysAbsProb Reindex Conditions