Re: [ccp4bb] off topic: measuring angle between two nucleic acid helices

2015-03-05 Thread Almudena Ponce Salvatierra
> > Cheers, > Thomas > > On 04 Mar 2015, at 13:04, Almudena Ponce Salvatierra > wrote: > > > Hi everyone, > > > > I would like to ask if any of you know how to measure the angle between > two nucleic acid helices? I am trying with pymol, but have not found a

Re: [ccp4bb] off topic: measuring angle between two nucleic acid helices

2015-03-04 Thread Thomas Holder
Hope that helps. Cheers, Thomas On 04 Mar 2015, at 13:04, Almudena Ponce Salvatierra wrote: > Hi everyone, > > I would like to ask if any of you know how to measure the angle between two > nucleic acid helices? I am trying with pymol, but have not found a solution &

Re: [ccp4bb] off topic: measuring angle between two nucleic acid helices

2015-03-04 Thread Chen Zhao
two nucleic acid helices? I am trying with pymol, but have not found a >> solution to it yet. >> > > phenix.angle might help, with or without effort on your side. > Pavel >

Re: [ccp4bb] off topic: measuring angle between two nucleic acid helices

2015-03-04 Thread Pavel Afonine
> I would like to ask if any of you know how to measure the angle between > two nucleic acid helices? I am trying with pymol, but have not found a > solution to it yet. > phenix.angle might help, with or without effort on your side. Pavel

[ccp4bb] off topic: measuring angle between two nucleic acid helices

2015-03-04 Thread Almudena Ponce Salvatierra
Hi everyone, I would like to ask if any of you know how to measure the angle between two nucleic acid helices? I am trying with pymol, but have not found a solution to it yet. Any ideas? Thanks a lot. Best, Almudena.

Re: nucleic acid helices

2007-01-22 Thread James Stroud
On Monday 22 January 2007 00:35, james whisstock wrote: > Quanta (accelrys) had a feature for this. Its so expensive, they don't even tell you the price. -- James Stroud UCLA-DOE Institute for Genomics and Proteomics Box 951570 Los Angeles, CA 90095 http://www.jamesstroud.com

Re: nucleic acid helices

2007-01-22 Thread James Stroud
For a quick dna or rna: http://structure.usc.edu/make-na Its super easy. James On Jan 22, 2007, at 12:11 AM, Florian Brückner wrote: Dear all, I am looking for a program or webtool that can create canonical nucleic acid helices (like B-form, A-form...) as well as a program that can

Re: nucleic acid helices

2007-01-22 Thread Michal Jakob
For the analysis of DNA molecules I would also recomend X3DNA Another possibility is 3DNA: (http://rutchem.rutgers.edu/~xiangjun/3DNA/) however if you would like to obtain a ideal model quicly try DNA tools http://hydra.icgeb.trieste.it/~kristian/dna/model_it.html Michal -- Michal Jak

Re: nucleic acid helices

2007-01-22 Thread james whisstock
Quanta (accelrys) had a feature for this. J Dear all, I am looking for a program or webtool that can create canonical nucleic acid helices (like B-form, A-form...) as well as a program that can calculate helical parameters from a given helix. Thanks in advance, Florian. -- Professor

Re: nucleic acid helices

2007-01-22 Thread Miguel Ortiz Lombardia
(http://www.ibpc.fr/UPR9080/Curindex.html) Cheers, Miguel Florian Brückner escribió: > Dear all, > > I am looking for a program or webtool that can create canonical nucleic > acid helices (like B-form, A-form...) as well as a program that can > calculate helical parameters from a given

nucleic acid helices

2007-01-22 Thread Florian Brückner
Dear all, I am looking for a program or webtool that can create canonical nucleic acid helices (like B-form, A-form...) as well as a program that can calculate helical parameters from a given helix. Thanks in advance, Florian