There is a new tool for that in CCP4, pdb2to3. It will try to convert
everything what is convertible, even when it is not "PDB2" or residue names do
not match, by applying graph matching and some heuristics.
Eugene
On 27 Jan 2013, at 13:27, Robbie Joosten wrote:
Hi Lisa,
I'm not sure it's the
7775 040376
From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of Robbie
Joosten
Sent: 27 January 2013 13:27
To: CCP4BB@JISCMAIL.AC.UK
Subject: Re: [ccp4bb] edit chi angles of DNA in coot
Hi Lisa,
I'm not sure it's the source of your problem, but your atom names are s
Hi Lisa,
I'm not sure it's the source of your problem, but your atom names are still in
PDBv2 format. That's 'so last decade'. Start by fixing that. There must be a
CCP4 tool that will do that. You can also use the MolProbity server to fix the
format.
For the developers: the problem with atom a
On 27/01/13 12:18, LISA wrote:
Hi all,
I am refining a protein-DNA complex. But when I adjust the position of
DNA by "edit chi angels", the phosphate does not move. Only the sugar
and base move
Here is partial DNA pdb. Is there any format problem of my pdb or I
miss some library?
Hello Lisa,
