, grey70]
color ramp, mesh
Cheers,
Warren
-Original Message-
From: CCP4 bulletin board [mailto:[EMAIL PROTECTED] On Behalf Of
Robert Esnouf
Sent: Thursday, November 01, 2007 5:06 AM
To: CCP4BB@JISCMAIL.AC.UK
Subject: Re: [ccp4bb] carving up maps (was re: pymol help)
Having put the "ma
Having put the "make my density look publishable" (mapcover) command in
BobScript, my conscience wouldn't ever let me use it as it gives a false
impression of experimental maps!
It is useful, though, in a couple of cases: where the map is not representing
electron density but calculated from th
CCP4BB@JISCMAIL.AC.UK
Subject: Re: [ccp4bb] carving up maps (was re: pymol help)
This is not such a problem when using the old "Map-cover" command
in O, because the cut-offs are flat planes, you would get cubic
density around each atom which would raise the suspicion of even
the most gullibl
I don't like using 'carve' options but I can see where it may come useful.
On the positive side, in the age where deposition of coordinates and
structure factors is almost mandatory, there shouldn't be a question of how
your map looks because presumably the skeptical reader can go and calculate
on
This is not such a problem when using the old "Map-cover" command
in O, because the cut-offs are flat planes, you would get cubic
density around each atom which would raise the suspicion of even
the most gullible reader.
But a better solution would be to not contour the carved surface-
leave a ga
Anastassis Perrakis wrote:
Dear Andrew,
Thank you for that posting; I would like to simply agree with the
Bobscript manual and your suggested practice.
I think the 'carve' commands should not be there; if you wonder why,
take a ligand, put it wherever you want in space,
set the map sigma to
Dear Andrew,
Thank you for that posting; I would like to simply agree with the
Bobscript manual and your suggested practice.
I think the 'carve' commands should not be there; if you wonder why,
take a ligand, put it wherever you want in space,
set the map sigma to -0.5, display a map with c
