Re: [ccp4bb] Stop the new PDB format!

2007-07-23 Thread mesters
I like to think structural biologists are more than just another user group, they FEED the PDB! Their needs should first and foremost be taken care off, I would think. Also, it would indeed be a great loss if legacy programs can not be used anymore. - Jeroen - Clemens Vonrhein wrote: Th

Re: [ccp4bb] Stop the new PDB format!

2007-07-23 Thread Clemens Vonrhein
Hmmm - ccp4bb doesn't allow an attachement ... so script comes here: -- cut here --- #!/bin/sh [ $# -eq 0 ] && echo " ERROR: give some PDB identifier as argument" type tkdiff >/dev/null 2>&1 [ $? -eq 0 ] && diff=tkdiff || diff=diff for id in $@ do i

Re: [ccp4bb] Stop the new PDB format!

2007-07-23 Thread Clemens Vonrhein
There is a collection of posts (unfortunately with a number of spam messages) at http://wwpdb-remediation.rutgers.edu/mail-archive/ with various comments. Although I'm not familiar with the internal workings of this remediation program, it seems indeed that the PDB format is now largely auto-ge

Re: [ccp4bb] Stop the new PDB format!

2007-07-21 Thread Ethan A Merritt
On Saturday 21 July 2007 11:12, Joe Krahn wrote: > we all use in our daily research. They don't even want to keep the PDB > format at all. It's primary purpose now is for structural biologists. That is inevitable. The PDB format is simply not capable of representing the complexities of current cr