Re: [ccp4bb] SCA

2010-01-18 Thread Jacob Keller
-240 2240 Campus Drive Evanston IL 60208 lab: 847.491.2438 cel: 773.608.9185 email: j-kell...@northwestern.edu *** - Original Message - From: "Tommi Kajander" To: Sent: Monday, January 18, 2010 4:10 PM Subject: Re: [ccp4bb] SCA yes, ot

Re: [ccp4bb] SCA

2010-01-18 Thread Tommi Kajander
yes, other people can comment probably but i think entropy based estimates are better (as i remember less dependent on sample set size). and indeed yale has a server. which may or may not do what you want. secondly its not proper to distributed ohter people's software w/o their permission (actu

Re: [ccp4bb] SCA

2010-01-18 Thread Jacob Keller
Hi Azadeh, I looked into this and other related methods extensively once, and came out with the understanding that SCA is not really the best of this type of analysis (you can read some of the papers out there which analyze the several methods). I found that the java package from Mark Gerstein'