Hello, yes, I tangled with this about a year ago so my memory is a bit vague. I
think you can get the mean protein B-factor from the refmac log file, but for
ligands, etc, I had to write a script. I can dig it out this evening if that's
any use.
Best wishes, Jon Cooper
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Answer to self: the number of non-H atoms per chain can be found in the PDB
validation report! Duh! I guess I’ll trust the average B values reported by
Refmac.
/Julia
--
Dr. Julia Griese
Assistant Professor
Department of Cell and Molecular Biology
Uppsala University
BMC, Box 596
SE-75124 Uppsal
Hi Julia,
For a table 1 you should make a sensible split of the atoms over which you
calculate the mean. You might need to pool certain chains. There is not really
convenient tool for that because the choice depends on the biology/biochemistry
of your system. In practice, the easiest way is usi
