Just to point out that the CCP4 wrapper to SSM "superpose" allows you to
specify residue ranges to consider - very useful for multi-domain proteins.
See the -s switches in
http://www.ccp4.ac.uk/dist/html/superpose.html
I'm not clear if this was your issue.
Cheers
Martyn
-Original Message--
Hi Tania,
A classical way of superimposing two structures is to use lsq_e and lsq_i
commands in O . You can specify the regions that you want to match and
visualize the superimposed structures right away to see if they make sense or
not. O will also give you a pairwise sequence alignment and RM
Hi,
You can use Chimera to do the work .
Good Luck!
liu
Tânia Oliveira wrote:
Hello,
I´m having a problem that I would like to know if someone could help me.
I want to do a 3D structure based alignment of my protein with another
one. The problem is that my protein has 2 domains, and the stru
Hallo Tânia,
you can try 'Rapido' by R. Mosca and T. Schneider at EMBL Hamburg. It is
available as a web application under:
http://webapps.embl-hamburg.de/rapido/
Best wishes,
Gerrit Langer.
Tânia Oliveira wrote:
Hello,
I´m having a problem that I would like to know if someone could help
