Re: [ccp4bb] yellow protein

2012-11-30 Thread Edward A. Berry
Maybe low-spin, ferric cytochrome? 420 would be the soret peak and 520 the alpha+beta peaks which are very broad in the oxidized form. Add a little dithionite or ascorbate and see if the soret peak shifts to longer wavelength and the alpha peak sharpens up at 550-560 nm Grishin, Andrey wrote: D

Re: [ccp4bb] yellow protein

2012-11-30 Thread Shane Caldwell
Hi Andrey, Are you sure it's not PLP? To me that looks like you have confounding aggregation, and PLP in two forms, perhaps only partly incorporated when considering your protein absorbance. Check out the spectra in the paper: Turning pyridoxal-5'-phosphate-dependent enzymes into thermostable bin

[ccp4bb] yellow protein

2012-11-30 Thread Grishin, Andrey
Dear CCP4bb users, this problem was already discussed many times here and I've read these discussions before writing. I have a pale yellow protein. The spectrum contains peaks at 320 and 420. Before we proceed to ICP-OES and wavelength scans at the synchrotron, may be some of you had a similar