Google 2D-GraLab. Very good at showing detailed interface contacts along
protein sequences.
To my knowledge, there is no way to include a non protein ligand.
But the source code is available on request and if you succeed to modify the
program, please let us know.
HTH,
Nadir Mrabet
Pr. Nad
This is the kind of things MG was designed to do -- Eugene
On 4 Jun 2013, at 15:18, Tobias Beck wrote:
Dear all,
I would like to visualize the interface of a protein-protein complex. The
complex formation is modulated by a ligand that upon binding alters the overall
structure of one protein, w
Hi Tobias,
this may or may not work.
calculate a map for both proteins, normalize them, put them on an identical
cell and subtract one map from another.
The program that can do this is called mapman *gosh* a non-CCP4 thing.
Good luck,
Jürgen
On Jun 4, 2013, at 10:18 AM, Tobias Beck wrote:
Dear
Dear all,
I would like to visualize the interface of a protein-protein complex. The
complex formation is modulated by a ligand that upon binding alters the
overall structure of one protein, which then in turn forms the complex with
the second protein (structure of the complex is known). Ligand bin
