Tillmann,
I've added a jiffy script to synthesize pseudo-precession photos from a
rotation dataset, to the latest PHENIX package. We build this package
nightly, so any PHENIX bundle with a version number greater than
"dev-402" will workhowever I see that dev-402 is not yet on the
public
> ... only in the [0kl] plane. ...
I'm sure you've already checked, but if during data collection the [0kl]
axis was nearly perpendicular to the rotation axis, then you may only have
to superimpose (with ipdisp) few suitably selected images to obtain a
small (low resolution) portion of what you
Tillmann,
I wrote a little jiffy some months ago, to go from raw images to a
pseudo-precession photo, in the context of labelit.index. I'll dig it
out and post a link to the program...
Nick
Tillmann Heinisch wrote:
Hi,
I have problems solving the structure of a protein crystal which seems
I wrote a little jiffy for doing this some years ago:
http://bl831.als.lbl.gov/~jamesh/pickup/adsc2pdb.com
However, I should note that this program relies on the DPS program:
dps_peaksearch to pick spots on each image in your data set. These
spots are then transformed into reciprocal space co
Storing a complete 3D image set in memory is moderately challenging even for
today's computers (probably several to several 10s of gigabytes, though you
could perhaps cheat a bit), so programs would probably have to use
old-fashioned double sort techniques to extract a zone. I wonder how the Bru
pleased to...
Marcus Winter.
(Oxford Diffraction Ltd.)
-Original Message-
From: CCP4 bulletin board [mailto:ccp...@jiscmail.ac.uk] On Behalf Of
George M. Sheldrick
Sent: 05 May 2010 17:20
To: CCP4BB@JISCMAIL.AC.UK
Subject: Re: [ccp4bb] software to represent raw reflections in
Hi
this is what I thought. I would imagine that you'd want to combine the
2D information in the X-ray images in a dataset into a 3D solid
figure, then look at slices through this for the RL projection you
were interested in. If you indexed the dataset first you should be
able to get the r
As Phil says, constructing an undistorted slice through reciprocal space
is much harder than displaying integrated intensities. The Bruker APEX2
software does this nicely and I understand that they can also convert
MAR CCD and possibly some other frame formats to Bruker format, which
presumably wo
I think he's looking for a program which will extract a plane from the raw 3D
reciprocal space, as sampled by the raw images (ie before integration, but with
the plane defined by the indexed lattice). That's a much harder job
Phil
On 5 May 2010, at 16:50, Tim Gruene wrote:
> Hi Tillmann,
> wha
Hi Tillmann,
what do you mean by 'raw intensities' as opposed to integrated data?
Would xprep be an option for you? It reads XDS_ASCII.HKL, but that's of course
after integration.
But it should be easy to convert any (non-binary) file containing raw
intensities into an hkl-file that you can read
to my knowledge hklview just works with integrated data whereas I need to plot
raw intensities along h, k and l to investigate reflection streakings. I heard
such software is routinely used in small molecule crystallography.
Tillmann
On May 5, 2010, at 3:18 PM, David Briggs wrote:
> Hi Tillman
hklview will generate pseudo precession images
Sent from my iPhone
On 05/05/2010, at 11:03 PM, Tillmann Heinisch > wrote:
Hi,
I have problems solving the structure of a protein crystal which
seems to be disordered. In order to investigate the disorder it
would be useful to have a precisio
Hi,
I have problems solving the structure of a protein crystal which seems to be
disordered. In order to investigate the disorder it would be useful to have a
precision photograph that shows reflections only in the [0kl] plane. Does
anyone know software that can transform raw data to give intens
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