Re: [ccp4bb] shelxd memory error

2015-05-13 Thread Chen Zhao
Hi Tim, Thanks a lot for your suggestion! I tried different versions later, and I found that the newest version doesn't work, but an old version works... I have no idea what is wrong, but anyway it is working now, and it is related to version... Thank you so much, Chen On Wed, May 13, 2015 at 3:

Re: [ccp4bb] shelxd memory error

2015-05-13 Thread Tim Gruene
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Dear Chen, the fact that you differentiate between mp and non-mp version of shelxd makes me assume you have a rather old version of shelxd installed. Can you try again with the latest version of shelxd and report if the (or any) error persists? Best

Re: [ccp4bb] shelxd memory error

2015-05-12 Thread Chen Zhao
Just an update. If I run shelxd from the command line the same error appears. However, if I change the shelxd to the mp version, the command line works but the hkl2map still doesn't work. I am more confused now. Your input is greatly appreciated! Best, Chen On Tue, May 12, 2015 at 5:11 PM, Chen

[ccp4bb] shelxd memory error

2015-05-12 Thread Chen Zhao
Hi all, I encountered a problem with shelxd (in hkl2map gui) installed in a flash drive running 32 bit Ubuntu OS. The error message is: OMP: Error #29: Unable to set OMP thread stack size to 268435456 OMP:System error #12: Cannot allocate memory OMP:Hint: Try decreasing OMP_STACKSIZE The $OMP_ST