Re: [ccp4bb] shape complementarity between protein and DNA surface

2012-02-07 Thread Tim Gruene
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Dear Deepak, the only atom type present in DNA and not in Proteins would be the Phosphorus. You can probably add this to sc_radii.lib yourself with the line ***P* 1.80 the radius stems from http://en.wikipedia.org/wiki/Phosphorus and the lin

[ccp4bb] shape complementarity between protein and DNA surface

2012-02-06 Thread Deepak Thankappan Nair
Dear All For calculation of the shape complementarity index using the Sc program between a protein and DNA surface, does anybody have a modified radii.lib file that includes information about DNA atoms? Also, is there any reference that has information regarding the atomic radii of DNA atoms? thank