Hi, after updating to ccp4/7.0, I get this error when trying to run Refmac:
Dictionary path has not been defined
Check the environment variable CLIBD_MON
Current value of CLIBD_MON is
/mnt/nfs/clustersw/shared/ccp4/7.0/ccp4-7.0/lib/data/monomers
It should be set to wherever_dict/dic/
===> Error: W
-
From: Alexander Batyuk [mailto:bat...@bioc.uzh.ch]
Sent: den 15 maj 2013 10:34
To: Martin Moche
Subject: Re: [ccp4bb] Refmac error
Dear Martin,
I think we solved it by changing the file's permissions (for mon_lib_list.cif)
to rwxrwxrwx
Best wishes,
Alex
On 15 May 2013, at 10:25, M
Dear colleagues,
I have the same problems as Peer Mittl once had.
Was this solved and what was the solution?
Running arpWarp the job terminates with the message:
Refmac_5.7.0032: Open failed: File:
/software/apps/ccp4/ccp4-6.3.0/lib/data/monomers/list/mon_lib_list.cif
However the mon_lib_l
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1
Dear Peer,
can you send the output of the command
ls -l /share/prog64/ccp4-6.3.0/lib/data/monomers/list/mon_lib_list.cif
Best,
Tim
On 04/12/2013 04:11 PM, Peer Mittl wrote:
> Dear Colleagues,
>
> For some reason Refmac refuses to read the file "mo
Dear Colleagues,
For some reason Refmac refuses to read the file "mon_lib_list.cif" athough the
file exists. The error message is as follows:
Open failed: Unit: 7, File:
/share/prog64/ccp4-6.3.0/lib/data/monomers/list/mon_lib_list.cif (logical:
/share/prog64/ccp4-6.3.0/lib/data/monomers/l
I don't know what went wrong and only have a suggestion how to fix your problem:
- use mtzdmp to check whether or not your input file contains an Rfree-flag
- if it does check the refmac5-mask if it picked it up correctly.
- if it does not, run uniquefy to create the Rfree-set
Tim
On Mon, May 10
Hi everybody,
I have got a problem concerning refmac5. When try to run refmac following error
occurs:
"Free R label has not been set."
I processed my data with xds. Scaling was done by scala. I did this like I
always used to do. So what went wrong?
Thank you in advance,
K
Kianoush wrote:
Dear All,
I occasionally get the following error after running refmac:
#CCP4I TERMINATION STATUS 0 Error from script
/home/local/LINUX/ccp4-6.0.2/ccp4i/scripts/refmac5.script: error
writing "stdout": I/O error
The above error is from the last lines of the log file. It seem
Dear All,
I occasionally get the following error after running refmac:
#CCP4I TERMINATION STATUS 0 Error from script
/home/local/LINUX/ccp4-6.0.2/ccp4i/scripts/refmac5.script: error writing
"stdout": I/O error
The above error is from the last lines of the log file. It seems that
refinement
