Re: [ccp4bb] re- HSSP Database

2024-10-07 Thread Bhavita Kattula
Sent: Monday, October 7, 2024 10:26 > > To: CCP4BB@JISCMAIL.AC.UK > > Subject: Re: [ccp4bb] re- HSSP Database > > > > Maybe someone else will have a different opinion, but I suspect that the > very > > best method to predict secondary structure at the moment is to predic

Re: [ccp4bb] re- HSSP Database

2024-10-07 Thread Robbie Joosten
, Robbie > -Original Message- > From: CCP4 bulletin board On Behalf Of Randy > John Read > Sent: Monday, October 7, 2024 10:26 > To: CCP4BB@JISCMAIL.AC.UK > Subject: Re: [ccp4bb] re- HSSP Database > > Maybe someone else will have a different opinion, but I susp

Re: [ccp4bb] re- HSSP Database

2024-10-07 Thread Randy John Read
Maybe someone else will have a different opinion, but I suspect that the very best method to predict secondary structure at the moment is to predict the tertiary structure using AlphaFold or another machine-learning structure prediction method, and then observe the secondary structure in the pre

[ccp4bb] re- HSSP Database

2024-10-07 Thread Bhavita Kattula
Hello everyone, I'm trying to access the Homology-derived Secondary Structure of Proteins (HSSP) database for protein structure-sequence alignments, but I am encountering issues. The database does not seem to be functioning as expected, and I'm unable to retrieve the necessary data. Could anyone