ss of hydrogen bonds upon folding is quite useful.
Just don't expect miracles.
Cheers,
Robbie Joosten
Date: Tue, 8 Feb 2011 10:52:09 -0800
From: eid...@blur.compbio.ucsf.edu
Subject: Re: [ccp4bb] quality homology model
To: CCP4BB@JISCMAIL.AC.UK
Hi Susy,
Before
ss of hydrogen bonds upon folding is quite useful.
Just don't expect miracles.
Cheers,
Robbie Joosten
Date: Tue, 8 Feb 2011 10:52:09 -0800
From: eid...@blur.compbio.ucsf.edu
Subject: Re: [ccp4bb] quality homology model
To: CCP4BB@JISCMAIL.AC.UK
Hi Susy,
Before
Hi Susy,
Before going into details: you have to get the alignment right. After
that, you may look into packing quality and geometry of your models.
Regarding the parameters you are interested in: I talked to a guy from
the Sali lab (Modeller) about quality assessment of homology models. He
r
Dear Community,
I have a question regarding protein model quality for introduction of point
mutations which should increase solibity/stability of my protein of interest.
I plan to do homology models so that I can check the most promising amino acids.
Which quality/resolution of the model do
