Re: [ccp4bb] protein structure for high schoolers

2012-02-06 Thread Joel Sussman
To: CCP4BB@JISCMAIL.AC.UK<mailto:CCP4BB@JISCMAIL.AC.UK> Subject: [ccp4bb] protein structure for high schoolers Hi- I am trying to help my former chemistry teacher set up a demonstration of protein structure for her class. I'd like to include electron density maps, and maybe show an enzyme a

Re: [ccp4bb] protein structure for high schoolers

2012-01-23 Thread Nadir T. Mrabet
I would suggest MolProbity along with KiNG (on Firefox!) would be most appropriate (http://kinemage.biochem.duke.edu/). HTH, Nadir Pr. Nadir T. Mrabet Structural& Molecular Biochemistry N-gere - INSERM U-954 Nancy University, School of Medicine 9, Avenue de la Foret de Haye, BP 184 54505 Vand

Re: [ccp4bb] protein structure for high schoolers

2012-01-20 Thread Sabuj Pattanayek
foldit doesn't do electron densities and I don't recall if there are any puzzles in it that mention active sites/docking (it's been more than a year since I "played" it), but it's worth a mention. > Hi- > > I am trying to help my former chemistry teacher set up a demonstration of > protein structu

Re: [ccp4bb] protein structure for high schoolers

2012-01-20 Thread Andrew Orry
James, I would like to recommend the free ICM-Browser http://www.molsoft.com/icm_browser.html . It is widely used for teaching structural biology and it is easy to make fun and interesting fully interactive 3D slides and animations of protein structures. The students can view the fully inter

Re: [ccp4bb] protein structure for high schoolers

2012-01-20 Thread Yoder, Marilyn
to:CCP4BB@JISCMAIL.AC.UK] On Behalf Of James Whittle Sent: Friday, January 20, 2012 3:41 PM To: CCP4BB@JISCMAIL.AC.UK Subject: [ccp4bb] protein structure for high schoolers Hi- I am trying to help my former chemistry teacher set up a demonstration of protein structure for her class. I'd like to in

Re: [ccp4bb] protein structure for high schoolers

2012-01-20 Thread Boaz Shaanan
n board [CCP4BB@JISCMAIL.AC.UK] on behalf of James Whittle [whit...@crystal.harvard.edu] Sent: Friday, January 20, 2012 11:41 PM To: CCP4BB@JISCMAIL.AC.UK Subject: [ccp4bb] protein structure for high schoolers Hi- I am trying to help my former chemistry teacher set up a demonstration of protein structur

[ccp4bb] protein structure for high schoolers

2012-01-20 Thread James Whittle
Hi- I am trying to help my former chemistry teacher set up a demonstration of protein structure for her class. I'd like to include electron density maps, and maybe show an enzyme active site. Are there suggestions from the BB on the easiest way to do this? Would pymol be the program of choice, or