Re: [ccp4bb] protein protein interactions

2020-02-10 Thread 00000c2488af9525-dmarc-request
Hello, if you mean theoretical docking, here is an old list of links:https://zlab.umassmed.edu/zdock/dockingsites.shtmlSome of these will still be maintained.Jon CooperOn 10 Feb 2020 16:50, Sarah Bowman wrote: Hi Careina,   There’s a program called FRODOCK that generates predictions of how tw

Re: [ccp4bb] protein protein interactions

2020-02-10 Thread Sarah Bowman
Hi Careina, There’s a program called FRODOCK that generates predictions of how two proteins could interact: http://chaconlab.org/modeling/frodock Cheers, Sarah Sarah EJ Bowman, PhD Associate Research Scientist, Hauptman-Woodward Medical Research Institute Director, High-Throughput Crystallizat

Re: [ccp4bb] Protein-Protein Interactions

2012-08-04 Thread Manish Chandra Pathak
>strengths and weaknesses. > >Cheers, > >Francisco > >From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of >Francisco Hernandez-Guzman >Sent: Thursday, August 02, 2012 10:21 AM >To: CCP4BB@JISCMAIL.AC.UK >Subject: Re: [ccp4bb] Protein-Protein Interact

Re: [ccp4bb] Protein-Protein Interactions

2012-08-02 Thread Francisco Hernandez-Guzman
bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of Francisco Hernandez-Guzman Sent: Thursday, August 02, 2012 10:21 AM To: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] Protein-Protein Interactions Hi Lorenzo, If the structure for your receptor is unknown, then you can use Homology Modeling

Re: [ccp4bb] Protein-Protein Interactions

2012-08-02 Thread Francisco Hernandez-Guzman
MAIL.AC.UK Subject: [ccp4bb] Protein-Protein Interactions Dear Colleagues, I have a question for all of you bioinformatics oriented structural biologists: How do I predict the sites of protein-protein interactions between two receptors that have been proven to interact biochemically but lack specifi

[ccp4bb] Protein-Protein Interactions

2012-08-02 Thread Dr. Lorenzo Finci
Dear Colleagues, I have a question for all of you bioinformatics oriented structural biologists: How do I predict the sites of protein-protein interactions between two receptors that have been proven to interact biochemically but lack specific details regarding proximity. This is not a straigh

Re: [ccp4bb] Protein Protein interactions

2009-08-18 Thread Rotem Sertchook
Hi, look in our servers list for interaction and contact analysis http://bip.weizmann.ac.il/toolbox/structure/tertiary.htm#contact pay attention to PISA which is very good for intermolecular and PIC for intra. Good luck Rotem On 17 Aug, 2009, at 20:13, protein.chemist protein.chemist w

Re: [ccp4bb] Protein Protein interactions

2009-08-18 Thread Eugene Krissinel
Mariah, you may want to try PISA at http://www.ebi.ac.uk/msd-srv/prot_int/pistart.html Eugene On Mon, 17 Aug 2009, protein.chemist protein.chemist wrote: Hello All, Can anyone tell me what are the programs used to find out the different interactions in a protein. I am talking about both int

Re: [ccp4bb] Protein Protein interactions

2009-08-17 Thread Regina Kettering
ugh ExPASy. Regina --- On Mon, 8/17/09, protein.chemist protein.chemist wrote: > From: protein.chemist protein.chemist > Subject: [ccp4bb] Protein Protein interactions > To: CCP4BB@JISCMAIL.AC.UK > Date: Monday, August 17, 2009, 1:13 PM > Hello All, > > Can anyone tell m

[ccp4bb] Protein Protein interactions

2009-08-17 Thread protein.chemist protein.chemist
Hello All, Can anyone tell me what are the programs used to find out the different interactions in a protein. I am talking about both intra and intermolecular interactions. Thanks in advance. Mariah -- Mariah Jones Department of Biochemistry University of Florida