Hi Alessandra,
Here is a list of nucleic acid and protein-nucleic acid related tools
(including the ones mentioned by Luca and Maia:
3DNA
http://rutchem.rutgers.edu/~xiangjun/3DNA/
http://w3dna.rutgers.edu/
curves
http://gbio-pbil.ibcp.fr/Curves_plus/Curves+.html
nucplot
http://www.biochem.ucl.a
I know two programs;
3DNA by Lu and curves by Lavery and Sklenar. 3DNA is easier to use, it
can also make input for the Curves.
Maia
Alessandra Pesce wrote:
Dear All,
I am looking for available programs and/or websites able to check the
structure of DNA in DNA-protein complexes. I need to
Ciao Alessandra,
A couple of pointers:
http://gbio-pbil.ibcp.fr/Curves_plus/Curves+.html
http://rutchem.rutgers.edu/~xiangjun/3DNA/
HTH,
Luca
Luca Jovine, Ph.D.
Group Leader & EMBO Young Investigator
Karolinska I
Dear All,
I am looking for available programs and/or websites able to check the
structure of DNA in DNA-protein complexes. I need to evaluate the DNA
bending, its backbone distortion, the alteration of the base pairing, and
its interaction with the protein. The aim is to compare in easy and quick
