Re: [ccp4bb] problems of co-crystallization of protein-DNA complex

2009-08-13 Thread Joe
Hi ruheng, Since you synthesized the oligos, you probably already know if there is any residual salt or buffer in your oligos.  I don't know if that caused the problem.  Sometimes people purify and desalt the oligos before the annealing step. Joe ruheng wrote:   Dear CCP4bbers,   I am no

Re: [ccp4bb] problems of co-crystallization of protein-DNA complex

2009-08-13 Thread Andy Torelli
Ru Heng, It is commonly helpful to combine your protein and DNA under dilute conditions and then concentrate the complex. Combining concentrated DNA and protein together has a very good chance of precipitating in my experience. I completely agree that trying different buffer conditions

Re: [ccp4bb] problems of co-crystallization of protein-DNA complex

2009-08-13 Thread Raji Edayathumangalam
Couple of things, Ru Heng. 1. What buffer conditions is your protein in? Is it similar to the buffer you describe as using to dissolve your DNA in? In general, you can even get away with dissolving and annealing the oligos in just Tris etc. 2. Play with buffer conditions, particularly NaCl

[ccp4bb] problems of co-crystallization of protein-DNA complex

2009-08-12 Thread ruheng
Dear CCP4bbers, I am now working on a DNA binding protein and the purity of the protein is quite good, however the results of DLS showed that the protein aggregates terribly in quite a lot of different buffer conditions I tried and still no crystals can be obtained. So I am going to co-c