Re: [ccp4bb] pdb_extact and refmac5.6

2011-07-29 Thread Jasmine Young
Hello, We are currently in the final stages of updating the standalone version of pdb_extract. In the meantime, we encourage users to try the web server version of the program at http://pdb-extract.rcsb.org/ The PDB_extract will: # provide you with an author information form, which can be sa

Re: [ccp4bb] pdb_extact and refmac5.6

2011-07-27 Thread Eric Larson
Hi Jan, Have you tried using the x.refmac file that is created instead of the log file. It is in cif format and may be in the "DepositFiles" directory. Hope you are well and talk to you later, Eric Eric T. Larson, PhD Biomolecular Structure Center Departm

[ccp4bb] pdb_extact and refmac5.6

2011-07-27 Thread Jan Abendroth
Hi all, we typically use pdb_extract to generate pdb files with a good header. There seems to be an issue with logfiles from refmac5.6.0117, distributed with the current ccp4 version, and pdb_extract. pdb_extract version-3.006 is distributed with ccp4-6.2.0. While reading the refmac log file, pdb_