On Thu, 2012-05-24 at 14:11 +0200, Eike Schulz wrote:
> Are there other ways to calculate the volume of a protein/complex from
> pdb-coordinates, maybe an alternative to SURFACE/VOLUME?
For a non-ccp4 solution, consider hydropro
http://leonardo.inf.um.es/macromol/programs/hydropro/hydropro.htm
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Dear Eike,
did you try surface/volume without any extra options? That should work
with a few lines of code, e.g.
surface xyzin1 yourfile.pdb xyzout yourfile.surface << eof1
RUN
STOP
eof1
volume xyzin yourfile.surface << eof2 | tee volume.log
RUN
eof
Hello everyone,
I am working on protein RNA complex and would like to verify the
oligomeric state from the crystal structure by analytical
ultracentrifugation (AUC). To fit data from AUC we need a good estimate of
the partial specific volume of the complex, therefore I wanted to retrieve
this valu
