Hi All
thanks for your detailed reply. A higher RMSF(as I showed in the png.) *doesnot
*mean that the RMSD for Calpha backbone showed be high. Am I correct ??
Because in my case the backbone RMSD for the receptor of the peptide bound
structure is lower than the receptor alone. Because I wanted to k
to complement the very nice description by jeremy, you may wish to try
and decompose the vibrational modes to get this sense by focussing on
the origins of the "red shift" in the vibrational spectrum and this
accounts largely for the increased vibrational entropies upon
complexation. This
Different proteins do different things. Some adopt fewer conformations and a
more rigid structure after binding
a ligand, and others do the opposite. Haemoglobin is a nice example of a
protein that becomes a lot more flexible
after picking up ligands. For any reaction of the kind P + L -> PL ther
Hi All,
I am trying to understand the mechanism of protein-peptide interaction in
two complexes (protein-pepA and protein-pepB).
While trying to perform some simulation experiments, I find that the* root
mean square fluctuation (RMSF) by residues of protein in the complex is
higher than that of the
