Hi Andreas,
This maybe a little ott, but the Rosetta suite of modelling programs will do
docking with some minimisation and side chain optimisation. You can also
enforce symmetry.
http://www.rosettacommons.org/
http://depts.washington.edu/bakerpg/
It is free to academics and runs on most platfor
Dear all,
Karen question reminded me that I have one also.
I study a protein that homodimerizes via a long helix. A number of
homologs exist. They all dimerize, but the structure is only known of
the first. Homology is high enough that I can easily thread the
homologs' sequences onto the s
