Yes but without the methyl groups on the sugars. I scavenged a GTA capped RNA
from a PDB - 5wfh - which draws the link from the GTA to the 5’-phosphate of
the RNA, but when you regularise them in coot, it breaks the connecting bond.
However after just starting to reply to you I realised that the
Can anyone tell me where to find a model dictionary entry for COOT and/or
phenix for the 7meG-pp residue that forms the 5’ cap on a messenger RNA ? I
need to be able to bond it to the 5’-end of an RNA model and bond it to the
existing 5’-phosphate of the first ribonucleotide.
Thanks,
Laurence
