On 28/04/2023 08:41, StrBio wrote:
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Hello,
Can you suggest how to make isopeptide bond in coot and g
Hi Amit,
If you are interested in generating restraints for SHELX then Grade2 supports
this (apply the cosine rule like Jon suggests) and producing ‘dfix’ files
for SHELXL (is this what you mean by a “shelxl” topology file)?
The Grade Web Server:
https://grade.globalphasing.org
can be used fo
Hello Amit, without PRODRG I don't know of another way to make the SHELX
dictionary restraints but it can be done by hand with a small-molecule
structure to measure the bond lengths and 1-3 atom distances from. You can also
use general values for the ideal bond lengths and angles and the cosine
Hello,
Can you suggest how to make isopeptide bond in coot and generate .cif file
to refine the structure in phenix?
Also need suggestions to create shelxl topology file for non standard amino
acids.
I used PRODGR before but seems like the sever is down last couple of
months. Any alternatives?
T
