Re: [ccp4bb] hydrophobic forces

2020-10-25 Thread Jon Cooper
Assuming that there are no bad van der Waals contacts, there should not be a problem. All the hydrophilic residues in your loop have hydrophobic parts which the methionine can interact with favourably. This should send any nearby waters into the more disordered bulk phase, which is entropically

[ccp4bb] hydrophobic forces

2020-10-25 Thread amit gaur
Hi All, I have a question that, I have a loop region with hydrophilic residues(TNETRERE) that lie close to methionine. Can, repulsive forces may occur because between methionine and hydrophilic residues? -- *Dr. Amit Gaur* *Post Doctoral Researcher* *Thomas Jefferson University* #