Hi Jiamu,
CASTp is a good tool for examining tunnels (http://sts-fw.bioengr.uic.edu/castp/
). The UCSF program Chimera (http://www.cgl.ucsf.edu/chimera/) can
download from the database and the latest snapshot can open your own
CASTp calculations.
Best,
Wally
On Aug 28, 2008, at 4:50 AM, J
Did you try "MOLE" (also available as a PyMOL plugin)?
http://mole.chemi.muni.cz/download.php
Karsten
Jiamu Du wrote:
Dear all,
I want to prepare a figure to present the surface of a channel inside of a
protein as shown in the attached figure.
I have used the program PASS and PYMOL (with CAVER)
Dear all,
I want to prepare a figure to present the surface of a channel inside of a
protein as shown in the attached figure.
I have used the program PASS and PYMOL (with CAVER) to make this figure.
Both the programs fail to find the channel. But the channel is large enough
in fact.
Is there any ot
