Dear Anagha,
just a guess...
I'm not sure I understood you properly, but you are only trying to
make a model of a solved protein which will lack 3-4 amino acids in a
loop... therefore, why not using a modeling soft, such as Coot,
remove the amino acids, and do one run of "Regularize Zone"?
Have you tried Modeller ?
-Sid.
On 2/28/07, anagha gupta <[EMAIL PROTECTED]> wrote:
Hi CCP4 community!
I have constructed a homology model of a deletion variant of a protein whose
structure has already been solved. These deletions are 3-4 amino acid in
length and are in a loop that connects tw
Hi CCP4 community!
I have constructed a homology model of a deletion variant of a protein whose
structure has already been solved. These deletions are 3-4 amino acid in
length and are in a loop that connects two helices. The model structures
look good with respect to bond lengths in the aforeme
