Hi, Stefano,
Thanks. I use Pymol 2.4. I figured out that if I downloaded the PDB (5L93)
RCSB website (biological assembly 1 PDB file), Pymol would show each state
of the structure (3 chains) individually, if I execute the "set all_states,
on" command, I can see the assembly.
Best,
Xiao
On Fri,
Dear David,
Thank you for your help. It seems the problem is due to the Pymol program.
I could only see 3 chains in Pymol from the assembly PDB downloaded from
the RCSB website (biological assembly 1 PDB file). If I use UCSF Chimera, I
can see 18 chains. With others' help, I can also use "sym" com
Dear Xiao,
For public entries in the PDB archive, it is possible to download the
coordinates of the assemblies defined in the PDB entry.
If you visit the page for the entry at PDBe (pdbe.org/5l93) and select
'Downloads' you have the option to download various data, including
mmCIF files cont
Dear Community,
I wonder if there is a way to generate symmetry mates of EM structures?
For example for PDB code 5L93, I tried PISA assembly server and Pymol to
generate assembly (18 chains) but failed because it is not a crystal
structure. I tried to download assembly directly from RCSB databank
