Re: [ccp4bb] few organophophates coordiantes

2007-09-06 Thread vijay kumar
Dear Sam The HIC-Up website link is http://xray.bmc.uu.se/hicup/ Hope it will help you Vijay Kumar, SRF Protein science and Engg. Division IMTECH, Sector -39A, Chandigarh INDIA U Sam <[EMAIL PROTECTED]> wrote Hi, Thanks for the reply to my earlier query.

Re: [ccp4bb] few organophophates coordiantes

2007-09-05 Thread William Scott
Hi Sam: You can define a SMILES string, put that in coot, and it will create coordinates. Similarly, within phenix, you can do this with elbow.builder and then optimize is either with built-in forcefields or with an external QM program. It will give you a reasonable (usually) cif file that you

[ccp4bb] few organophophates coordiantes

2007-09-05 Thread U Sam
Hi, Thanks for the reply to my earlier query. I am looking for the coordinates of few organophosphates which can bond covalently to protein as follows . 1) Para-oxon: O,O-Diethyl-O-para-nitrophenyl phosphate 2) Sarin: 2-(fluoro-methyl-phosphoryl)oxypropane 3) Soman: 3-(fluoro-methyl-phosphoryl)o