Dear Fred,
the error message looks like ligplot was started through a script, that
uses an environment variable, which is not set, soemthing like
${MYLIGPLOTDIR}/components.cif
In case MYLIGPLOTDIR is not set, you would get this sort of error
messages.
Best,
Tim
On Tue, 6 Apr 2021 15:47:21 +02
Hi Fred
Ligplot diagram is part of PDBsum output - maybe that will work for you.
Bostjan
--
Bostjan Kobe FAA
Australian Research Council Laureate Fellow
Professor of Structural Biology
School of Chemistry and Molecular Biosciences
and Institute for Molecular Bioscience (Division of Chemistry an
What about coot? Have a look at
https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/files/coot-may-2017-ligands-madrid-mcs2017-csic.pdf
pp28-40
and
Emsley P. (2017). Tools for ligand validation in Coot.
Acta Crystallogr. D73, 203–210.
https://doi.org/10.1107/S2059798317003382
https://www.ncbi.n
Hi Fred,
I'm currently making some similar figures and I came across PLIP
https://plip-tool.biotec.tu-dresden.de/plip-web/plip/index
It doesn't give the 1d plots but it gives a very nice pymol output to
make 3d images.
Hope that helps,
Rob
ce
On 6/04/2021 15:47, Fred Vellieux wrote:
Hi f
Hi folks,
I'm trying to run Ligplot on a PDB file that contains a residue with
type UNL (Unknown Ligand). I hadn't been using LigPlot for perhaps 2
years now (which means that I had to reinstall, with an expired license,
and get familiar with it again). I get the following error message
(rath
