Please not that average B value may be arbitrary depending on data processing
program, reference image etc. Average B values could be arbitrary (you can add
to all atom single B value and it will not change information content of the
data, they are removable). I think either variance of B or -
ntains fewer than
> 500 reflections. It's amazing how much R-free is influenced by the choice
> of ones test set.
>
> Cheers,
> Robbie
>
>> Date: Wed, 16 May 2012 16:06:24 +0200
>> From: t...@shelx.uni-ac.gwdg.de
>> Subject: Re: [ccp4bb] correlations of B-facto
r.
I do this automatically in PDB_REDO if the test set contains fewer than 500
reflections. It's amazing how much R-free is influenced by the choice of ones
test set.
Cheers,
Robbie
> Date: Wed, 16 May 2012 16:06:24 +0200
> From: t...@shelx.uni-ac.gwdg.de
> Subject: Re: [ccp4bb
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Dear Qiang,
without much explanation, rather from experience, the average B-factor
rises as resolution drops. It does make sense in a way because high
B-factors indicate some degree of disorder and disorder is usually the
cause for the resolution limi
Dear all,
I have a 2.4A structure(pdb code 3LAF)with an average protein b-factor of
48. I wonder whether it's acceptable. Is there a direct correlation of
b-factor and resolution?
The R and Rfree are 21.1% and 23.1%, respectively.
This structure has a very high solvent content, 75%. Does it affect
