Hi folks
many thanks for the replies - all very helpful.
I can see that my example of P01132 might have been taken as a protein that I
have a real current interest in - unfortunately, it isn’t (pace! to anyone who
is working on malaria), it was just the first example I found that had no
struc
Hi Harry,
A useful starting point when looking for the 'best' [insert criteria
here] structure in the PDB for a specific protein is to visit the
PDBe-KB aggregated views pages (https://pdbekb.org). These pages group
PDB data based upon UniProt accession and the 'structures' tab on these
pages
Hi Harry,
My advice would be to use one of those new-fangled predicted models. You can
find a model in the AlphaFold database at the EBI
(https://alphafold.ebi.ac.uk/entry/P01132). If you look at it, there are parts
(likely corresponding to the constructs that were crystallised) that look
conf
behalf of Harry Powell
<193323b1e616-dmarc-requ...@jiscmail.ac.uk>
Date: Wednesday, 3 May 2023 at 11:45
To: CCP4BB@JISCMAIL.AC.UK
Subject: [ccp4bb] choosing an NMR structure from PDB
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Hi folks
I was wondering.
If there is a UniProt entry (for example, P01132, but there are plenty of
others) for which I want the “best” (whatever that might mean) representative
_experimental_ structure (i.e. not one of these new-fangled predicted models
that some folk say have removed the nee
