riginal Message-
>> From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of
>> Phil Evans
>> Sent: Monday, January 09, 2012 12:54
>> To: CCP4BB@JISCMAIL.AC.UK
>> Subject: Re: [ccp4bb] chirality problem
>>
>> The problem with fixing the nom
bject: Re: [ccp4bb] chirality problem
>
> The problem with fixing the nomenclature "problems" in Coot is that they
are
> back again after the next round of refinement (or at least some of them
are,
> if they are right on the edge of an arbitrary distinction) - indeed
irritating Phil
&
The problem with fixing the nomenclature "problems" in Coot is that they are
back again after the next round of refinement (or at least some of them are, if
they are right on the edge of an arbitrary distinction) - indeed irritating
Phil
On 9 Jan 2012, at 11:43, Paul Emsley wrote:
> On 08/01/12
On 08/01/12 10:36, ccp4 wrote:
Won't coot fix the nomenclature issue, then you can check whether you have
a real chirality problem - eg a squashed flattened VAL..
It will indeed [1]. So Afshan need only read in the file, Press OK and
then Save.
Robbie and I think that it is more likely tha
, and a whole lot of other more interesting hetero
>> compounds.
>>
>> @ Paul, I don't think it will be a CCP4 program that reported the
>> problem.
>> Does the 'fix nomenclature problems' option in Coot also do VAL and
LEU?
>>
>> Cheers,
&g
aul, I don't think it will be a CCP4 program that reported the problem.
> Does the 'fix nomenclature problems' option in Coot also do VAL and LEU?
>
> Cheers,
> Robbie
>
> ------
> Date: Fri, 6 Jan 2012 10:44:58 +
> From: pau
omenclature problems' option in Coot also do VAL and LEU?
Cheers,
Robbie
Date: Fri, 6 Jan 2012 10:44:58 +
From: paul.ems...@bioch.ox.ac.uk
Subject: Re: [ccp4bb] chirality problem
To: CCP4BB@JISCMAIL.AC.UK
Hi Afshan,
This is not the solution if you are right about the problem bei
. The problem is still very real to many
programs so it should be fixed.
Cheers,
Robbie Joosten
Date: Thu, 5 Jan 2012 02:46:30 -0800
From: afshan...@yahoo.com
Subject: [ccp4bb] chirality problem
To: CCP4BB@JISCMAIL.AC.UK
Dear
2012 02:46:30 -0800
From: afshan...@yahoo.com
Subject: [ccp4bb] chirality problem
To: CCP4BB@JISCMAIL.AC.UK
Dear Users,
I am facing difficulties to validate my structure according to PDB server. I
have solved my structure and now want to submit in PDB but during validation
process i have
Dear Users,
I am facing difficulties to validate my structure according to PDB server. I
have solved my structure and now want to submit in PDB but during validation
process i have some chirality problem specially VAL and LEU amino acids
there are total 18 amino acids which deviated from the
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