.@unipv.it>>
*Sent:* Tuesday, January 30, 2018 1:51 PM
*To:* CCP4BB@JISCMAIL.AC.UK <mailto:CCP4BB@JISCMAIL.AC.UK>
*Subject:* [ccp4bb] cavities in protein structures
Hi everyone,
I need suggestions to calculate and represent
E-mail:
>> bshaa...@bgu.ac.il Phone: 972-8-647-2220 Skype:
>> boaz.shaanan Fax: 972-8-647-2992 or 972-8-646-1710*
>>
>>
>>
>>
>>
>>
>>
>> --
>> *From:* CC
4105
> Israel
> E-mail:
> bshaa...@bgu.ac.il Phone: 972-8-647-2220 Skype:
> boaz.shaanan Fax: 972-8-647-2992 or 972-8-646-1710*
>
>
>
>
>
>
>
> ----------
> *Fr
PM
*To:* CCP4BB@JISCMAIL.AC.UK
*Subject:* [ccp4bb] cavities in protein structures
Hi everyone,
I need suggestions to calculate and represent cavities of protein
structures. For years I have been using Voidoo that produces maps in ezd
format which could be converted in map format (ccp4) using the onl
PM
To: CCP4BB@JISCMAIL.AC.UK
Subject: [ccp4bb] cavities in protein structures
Hi everyone,
I need suggestions to calculate and represent cavities of protein structures. For years I have been using Voidoo that produces maps in ezd format which could be converted in map format (ccp4) using the o
Hi Claudia
Two options I've used recently, liked and displayed without fuss in
PyMOL are ProFunc
(https://www.ebi.ac.uk/thornton-srv/databases/profunc/) and Ghecom
(http://strcomp.protein.osaka-u.ac.jp/ghecom/). Ghecom gives you PDB
files directly. ProFunc gives you rasmol scripts but they op
Hi everyone,
I need suggestions to calculate and represent cavities of protein
structures. For years I have been using Voidoo that produces maps in ezd
format which could be converted in map format (ccp4) using the online
server http://xray.bmc.uu.se/cgi-bin/gerard/mapman_server.pl. However, this
