Hi
This was brought to my attention after I posted yesterday, to add to the list I
sent then -
pyvol - Python (as a PyMol plug-in, a python module and as a command-line
Python script) - needs a config file to run -
https://schlessinger-lab.github.io/pyvol/index.html
The output is th
Hi Mike
Interesting. I haven’t looked at Java stuff for quite some time…
Harry
> On 4 Jan 2023, at 12:53, Mike S wrote:
>
> Have you tried P2Rank? It is quite fast, and there is a standalone version
> that has command line options to run against all coordinate files in a
> directory using b
Have you tried P2Rank? It is quite fast, and there is a standalone version
that has command line options to run against all coordinate files in a
directory using batch mode.
https://prankweb.cz/
https://prankweb.cz/about
https://github.com/rdk/p2rank
You can try the web version to see how it per
THX for the replies -
> On 3 Jan 2023, at 22:56, Bernhard Rupp wrote:
>
> There is also a service from our Polish friends:
> called Spaceball (jokes aside) that calculates the volume of protein cavities
> (http://www.ifpan.edu.pl/~chwastyk/spaceball/).
> and the services in Hamburg are useful
There is also a service from our Polish friends:
called Spaceball (jokes aside) that calculates the volume of protein cavities
(http://www.ifpan.edu.pl/~chwastyk/spaceball/).
and the services in Hamburg are useful for visualization of binding pockets and
channels
https://proteins.plus/
Best, BR
Hi Harry
if you mean predicting binding sites, FT map is quite good
Andre S. Godoy, PhD
Universidade de São Paulo
Instituto de Física de São Carlos
Av. João Dagnone, 1100, Jd. Santa Angelina13563-120 - São Carlos, SP, Brazil
Em terça-feira, 3 de janeiro de 2023 12:15:19 BRT, Harry Powel
PanDDA ?
On 1/3/2023 7:14 AM, Harry Powell wrote:
Hi folks
I was wondering what people’s favourite program is to find binding pockets in
proteins. I’ve had a look at a couple but each has its own idiosyncrasies.
HNY
Harry
##
Hi folks
I was wondering what people’s favourite program is to find binding pockets in
proteins. I’ve had a look at a couple but each has its own idiosyncrasies.
HNY
Harry
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