Dear Monica,
On Jun 16, 2014, at 10:39 AM, Monica Mittal wrote:
> Dear all
> I am getting this error while running arp/warp to build DNA/RNA:
> PHIB is not assigned to an mtz label
> Input was merged data (.mtz)
> However no such problem while using arp/warp classic as i chose for automated
> mo
Dear all
I am getting this error while running arp/warp to build DNA/RNA:
PHIB is not assigned to an mtz label
Input was merged data (.mtz)
However no such problem while using arp/warp classic as i chose for
automated model building from existing model and not experimental phases.
Kindly help how
Hello Seema,
I believe this error occurs because ARP/wARP has not been setup within the
startup file for the shell that you are using. For instance, if you use bash
(the default under most Linux distributions) you need to add the following line
to the .bashrc file in your home directory:
sour
I've recently installed arp/warp(7.1) in ccp4 6.2 in linux i686,the problem is
whenever I'm trying to run arp/warp navigator or any other programs under
arp/warp it gives the error " cannot get environment variable for warpbin"
Please help.
Thanks in advance.
Seema Nath
Dear all,
First, I am happy that there is am easy solution.
Second, let me clarify that ARP/wARP CCP4i GUI uses standard CCP4i
library functions to read in files etc etc.
I am sorry to get technical, but what I do is simply:
CreateInputFileLine line \ [...lines deleted...]
-setfile
On Tue, Dec 01, 2009 at 04:57:38PM +, Eleanor Dodson wrote:
> One easy suggestion - try buccaneer and refinement!
> Eleanor
> The Arp/warp people will have to fix this..
It's also possible that this is due to a ctruncate problem: if the CAD
job adds the SHARP MTZ file (with C2) and a MTZ file
Hi all,
I ran into that several times in the monoclinic space groups. ARP/wARP does
not seem to like the C121 notation, yet likes the C2 notation. Same for P121
vs. P2. Re-assigning the SG eg. in CAD using the correct notation or the SG
number is an easy remedy.
Cheers
Jan
On Tue, Dec 1, 2009 at
Dear Jan,
that is an annoying thing with Arp/wARP - it sometimes does not
recognise some space groups, esp. the monoclinic ones with eg can be
called C2 or C121 etc.
Run the mtz file again through CAD, use SG 5 or C2. That should work.
and it does! Thanks a lot.
Let's hope these ann
One easy suggestion - try buccaneer and refinement!
Eleanor
The Arp/warp people will have to fix this..
Anita Lewit-Bentley wrote:
Dear all,
I have a nice MAD map produced by Sharp and would like to trace a chain
into it using Arp/wArp. When I input the mtz file via the CCP4i
interface, I
Dear all,
I have a nice MAD map produced by Sharp and would like to trace a
chain into it using Arp/wArp. When I input the mtz file via the CCP4i
interface, I get the following message:
"Cannot extract ARP/wARP asymmetric unit limits
The job will fail if run"
Well it DOES fail when run!
M
Indeed it did! It is kind of funny that Arpwarp Classic would be fine
without a restart, but Expert System wouldn't, after installing the
arpwarp interface in ccp4i. What was that joke about the computer
scientists' solution to broken cars being 'Get out of the car, and get
back in'?
Thank yo
Hi everybody,
I was messing around with Arp/warp in ccp4 recently, and got stuck with
the version that uses the new autotracing algorithm. The same run using
the "Classic" algorithm runs without a problem, but the "Expert System"
using flex-wARP 1.0 dies with "PHIB is not assigned to an mtz la
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