You can do this using coot. Just switch on showing symmetry mates(menu
Draw->Cell&Symmetry). Then save the needed by "Save Symmetry Coordinates
Option" in menu File. Waters coordinates will be saved as well.
Regards,
Andrii
I'm running watertidy to move all waters to the (symmetry-related)
position closest to my protein. One protein chain (A), 144 waters (chain
W).
Trouble is, one round of watertidy doesn't move many of the waters
(e.g., a water only 2.7 Ang. from a carbonyl oxygen of a symm-related
protein was not m