Re: [ccp4bb] Trouble Refining Ligand in Phenix

2014-04-22 Thread Chris Fage
4 8:21 AM > To: CCP4BB@JISCMAIL.AC.UK > Subject: [ccp4bb] Trouble Refining Ligand in Phenix > > Hi Everyone, > > I am trying to refine a structure with a phosphorylated amino acid. After > refining in Phenix, the Fo-Fc density (green) overlaps the 2Fo-Fc density > for all atom

[ccp4bb] Trouble Refining Ligand in Phenix

2014-04-21 Thread Chris Fage
Hi Everyone, I am trying to refine a structure with a phosphorylated amino acid. After refining in Phenix, the Fo-Fc density (green) overlaps the 2Fo-Fc density for all atoms of the derivatized amino acid in Coot, almost as if I had not built in the residue. I am loading a .cif for the derivative