Dear Jeorge
just as a curiosity:
1- do you see a continuous electron density for the ligand, before and after
performing the refinement?
2- do you have only one copy of the molecule(s), and if not, do you see the
same behaviour for all the ligands?
3- what are the B-factor values for the ligand?
Dear all,
I am working on my molecule, but after running
Refmac5 restrained refinement the bonding distances and angles are broken.
I used Phenix to create the ligand and used Coot to place the ligand
into the correct location in the molecule, merged the ligand and
molecule coordinates, and save
