8-646-1710
From: CCP4 bulletin board [CCP4BB@JISCMAIL.AC.UK] on behalf of Eleanor Dodson [eleanor.dod...@york.ac.uk]
Sent: Tuesday, April 28, 2015 3:06 PM
To: CCP4BB@JISCMAIL.AC.UK
Subject: Re: [ccp4bb] Residue positional validation
Or use edstats in CCP4 - gives
Or use edstats in CCP4 - gives lots of statistics and a good evaluation of
fit
Eleanor
On 27 April 2015 at 16:26, wrote:
> Dear Monica,
>
> We can also, perhaps, most helpfully quote from our forthcoming article in
> J Appl Cryst, Volume 48, Part 3 (June 2015):-
>
> "An online computing server,
Dear Monica,
We can also, perhaps, most helpfully quote from our forthcoming article in J
Appl Cryst, Volume 48, Part 3 (June 2015):-
"An online computing server, Online_DPI, is created and maintained to calculate
the ‘Cruickshank DPI’ value for a given three-dimensional protein or
macromolecu
Dear Monica:
To calculate Diffraction Precision Index (DPI) and individual atomic coordinate
errors:
You could either go through the IUCrJ article entitled "Do we see what we
should see? Describing non-covalent interactions in protein structures
including precision"
(http://journals.iucr.org/
Hej,
In thread to my previous mail, i calculated the minimum and maximum errors
as well as DPI for the structure. But want to ask what are the allowed
limits for the above values to decide for the correctness of the positional
movements within the structure ?
Thanks
On Mon, Apr 27, 2015 at 10:54
Hi everyone,
Can anyone guide me to calculate the diffraction component precision index
(DPI) for validating the positional error of certain critical residues in
my structure ?
Thanks in advance
Monica
