Re: [ccp4bb] Refinement with native and anomalous data

2019-01-04 Thread Piotr Wilk
>My advice is to simply cycle back-and-forth between the two data sets. Refine against your high-resolution data until that converges, then simply >switch to the other mtz file and use F+ F-, along with "anomalous wavelength" and probably "refine orefine no", unless you want to refine the >occupan

Re: [ccp4bb] Refinement with native and anomalous data

2019-01-04 Thread James Holton
My advice is to simply cycle back-and-forth between the two data sets.  Refine against your high-resolution data until that converges, then simply switch to the other mtz file and use F+ F-, along with "anomalous wavelength" and probably "refine orefine no", unless you want to refine the occupa

Re: [ccp4bb] Refinement with native and anomalous data

2019-01-04 Thread Steiner, Roberto
Dear Piotrek You can find some info on the use of prior phase information in refinement with Refmac in Acta Crystallogr D Biol Crystallogr. 2011 Apr;67(Pt 4):355-67. doi: 10.1107/S0907444911001314. Epub 2011 Mar 18. REFMAC5 for the refi

Re: [ccp4bb] Refinement with native and anomalous data

2019-01-04 Thread Piotr Wilk
Dear Eleanor, I have used the ACORN previously for structure solution but I will have to read more about its functionality in structure refinement. I have run two Refmac jobs using either native or anomalous data with otherwise default parameters resulting in R/Rfree of 0.2013/0.2458 and 0.1862/0.

Re: [ccp4bb] Refinement with native and anomalous data

2019-01-03 Thread Eleanor Dodson
I think any decision depends on the resolution of your two data sets. If they are very different I would choose the higher resolution one. If that is the Anom data then I would use the anom signal at least in the first cycles to improve the phases.. Eleanor On Thu, 3 Jan 2019 at 14:59, Piotr Wil

[ccp4bb] Refinement with native and anomalous data

2019-01-03 Thread Piotr Wilk
Dear CCP4 experts, I'd like to ask your opinion about using anomalous signal in refinement of crystal structures in addition to using high resolution native data. I am working on a series of structures for which I have collected two data sets (from the same crystal): 1 - native with higher resolut