I figured it out. Rcrane works fine if I remove the hydrogens before going
into Coot.
Ursula
On Wed, Jun 21, 2017 at 12:04 PM, Ursula Schulze-Gahmen <
uschulze-gah...@lbl.gov> wrote:
> I am trying to use Rcrane in stand-alone coot version 0.8.8. The Rcrane
> window opens and I am able to calcula
I'm thinking a nomenclature issue.
H5 ? Should be H5' no?
Have you run your structure through a pdb remediator?
http://kinemage.biochem.duke.edu/software/remediator.php is my favorite.
You will want to play around with the flags to get the right output. I think
rCrane likes old style nomen
I am trying to use Rcrane in stand-alone coot version 0.8.8. The Rcrane
window opens and I am able to calculate new conformations for my nucleic
acid. But when I am trying to accept a conformation, I am getting an error
message:
Traceback (most recent call last):
File
"/home/programs/x86_64-linu
